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1

Genomic Selection in Plant Breeding: Methods, Models, and Perspectives

Crossa, José, Pérez-Rodríguez, Paulino, Cuevas, Jaime, Montesinos-López, Osval, Jarquín, Diego, de los Campos, Gustavo, Burgueño, Juan, Camacho-González, Juan M., Pérez-Elizalde, Sergio, Beyene, Yosep

Journal:

Trends in Plant Science

Year:

2017

Language:

english

File:

PDF, 1.97 MB

english, 2017

2

Genomic Selection and Prediction in Plant Breeding

Crossa, José, Pérez, Paulino, de los Campos, Gustavo, Mahuku, George, Dreisigacker, Susanne, Magorokosho, Cosmos

Journal:

Journal of Crop Improvement

Year:

2011

Language:

english

File:

PDF, 584 KB

english, 2011

3

Effectiveness of Shrinkage and Variable Selection Methods for the Prediction of Complex Human Traits using Data from Distantly Related Individuals

Berger, Swetlana, Pérez-Rodríguez, Paulino, Veturi, Yogasudha, Simianer, Henner, de los Campos, Gustavo

Journal:

Annals of Human Genetics

Year:

2015

Language:

english

File:

PDF, 806 KB

english, 2015

4

Bayesian functional regression as an alternative statistical analysis of high-throughput phenotyping data of modern agriculture

Montesinos-López, Abelardo, Montesinos-López, Osval A., de los Campos, Gustavo, Crossa, José, Burgueño, Juan, Luna-Vazquez, Francisco Javier

Journal:

Year:

2018

Language:

english

File:

PDF, 2.62 MB

english, 2018

5

A Pedigree-Based Reaction Norm Model for Prediction of Cotton Yield in Multienvironment Trials

Pérez-Rodríguez, Paulino, Crossa, José, Bondalapati, Krishna, De Meyer, Geert, Pita, Fabiano, Campos, Gustavo de los

Journal:

Year:

2015

Language:

english

File:

PDF, 2.76 MB

english, 2015

6

Single-Step Genomic and Pedigree Genotype × Environment Interaction Models for Predicting Wheat Lines in International Environments

Pérez-Rodríguez, Paulino, Crossa, José, Rutkoski, Jessica, Poland, Jesse, Singh, Ravi, Legarra, Andrés, Autrique, Enrique, Campos, Gustavo de los, Burgueño, Juan, Dreisigacker, Susanne

Journal:

The Plant Genome

Year:

2017

Language:

english

File:

PDF, 835 KB

english, 2017

7

Will Big Data Close the Missing Heritability Gap?

Kim, Hwasoon, Grueneberg, Alexander, Vazquez, Ana I., Hsu, Stephen, de los Campos, Gustavo

Journal:

Year:

2017

Language:

english

File:

PDF, 1.25 MB

english, 2017

8

Use of Hyperspectral Image Data Outperforms Vegetation Indices in Prediction of Maize Yield

Aguate, Fernando M., Trachsel, Samuel, Pérez, Lorena González, Burgueño, Juan, Crossa, José, Balzarini, Mónica, Gouache, David, Bogard, Matthieu, Campos, Gustavo de los

Journal:

Year:

2017

Language:

english

File:

PDF, 1.76 MB

english, 2017

9

Genomic Selection for Late Blight and Common Scab Resistance in Tetraploid Potato ( Solanum tuberosum )

Enciso-Rodriguez, Felix, Douches, David, Lopez-Cruz, Marco, Coombs, Joseph, de los Campos, Gustavo

Journal:

G3 Genes|Genome|Genetics

Year:

2018

Language:

english

File:

PDF, 2.62 MB

english, 2018

10

Genomic Prediction of Genotype × Environment Interaction Kernel Regression Models

Cuevas, Jaime, Crossa, José, Soberanis, Víctor, Pérez-Elizalde, Sergio, Pérez-Rodríguez, Paulino, Campos, Gustavo de los, Montesinos-López, O. A., Burgueño, Juan

Journal:

The Plant Genome

Year:

2016

Language:

english

File:

PDF, 2.18 MB

english, 2016

11

Correction to: Bayesian functional regression as an alternative statistical analysis of high-throughput phenotyping data of modern agriculture

Montesinos-López, Abelardo, Montesinos-López, Osval A., de los Campos, Gustavo, Crossa, José, Burgueño, Juan, Luna-Vazquez, Francisco Javier

Journal:

Year:

2018

Language:

english

File:

PDF, 676 KB

english, 2018

12

Extending the Marker × Environment Interaction Model for Genomic-Enabled Prediction and Genome-Wide Association Analysis in Durum Wheat

Crossa, José, de los Campos, Gustavo, Maccaferri, Marco, Tuberosa, Roberto, Burgueño, J., Pérez-Rodríguez, Paulino

Journal:

Year:

2016

Language:

english

File:

PDF, 5.09 MB

english, 2016

13

Transcriptome-Based Prediction of Complex Traits in Maize

Azodi, Christina B., Pardo, Jeremy, VanBuren, Robert, de los Campos, Gustavo, Shiu, Shin-Han

Journal:

Year:

2020

File:

PDF, 2.04 MB

2020

14

Prediction of Complex Human Traits Using the Genomic Best Linear Unbiased Predictor

de los Campos, Gustavo, Vazquez, Ana I., Fernando, Rohan, Klimentidis, Yann C., Sorensen, Daniel, Goddard, Michael E.

Journal:

Year:

2013

Language:

english

File:

PDF, 466 KB

english, 2013

15

Inferring genetic values for quantitative traits non-parametrically

GIANOLA, DANIEL, de los CAMPOS, GUSTAVO

Journal:

Genetics Research

Year:

2008

Language:

english

File:

PDF, 246 KB

english, 2008

16

OCMA: Fast, Memory-Efficient Factorization of Prohibitively Large Relationship Matrices

Xiong, Zhi, Zhang, Qingrun, Platt, Alexander, Liao, Wenyuan, Shi, Xinghua, de los Campos, Gustavo, Long, Quan

Journal:

G3 Genes|Genome|Genetics

Year:

2018

File:

PDF, 718 KB

2018

17

Imperfect Linkage Disequilibrium Generates Phantom Epistasis (& Perils of Big Data)

de los Campos, Gustavo, Sorensen, Daniel Alberto, Toro, Miguel Angel

Journal:

G3 Genes|Genome|Genetics

Year:

2019

File:

PDF, 1.21 MB

2019

18

Regularized selection indices for breeding value prediction using hyper-spectral image data

Lopez-Cruz, Marco, Olson, Eric, Rovere, Gabriel, Crossa, Jose, Dreisigacker, Susanne, Mondal, Suchismita, Singh, Ravi, Campos, Gustavo de los

Journal:

Scientific Reports

Year:

2020

File:

PDF, 4.48 MB

2020

19

Predicting genetic predisposition in humans: the promise of whole-genome markers

de los Campos, Gustavo, Gianola, Daniel, Allison, David B.

Journal:

Nature Reviews Genetics

Year:

2010

Language:

english

File:

PDF, 398 KB

english, 2010

20

Factors Affecting the Accuracy of Genotype Imputation in Populations from Several Maize Breeding Programs

Hickey, John M., Crossa, Jose, Babu, Raman, de los Campos, Gustavo

Journal:

Year:

2012

Language:

english

File:

PDF, 1.01 MB

english, 2012

21

Three-step Bayesian factor analysis applied to QTL detection in crosses between outbred pig populations

Fabyano Fonseca Silva, Guilherme J.M. Rosa, Simone E.F. Guimarães, Paulo Sávio Lopes, Gustavo de los Campos

Journal:

Livestock Science

Year:

2011

Language:

english

File:

PDF, 357 KB

english, 2011

22

Modeling Heterogeneity in the Genetic Architecture of Ethnically Diverse Groups Using Random Effect Interaction Models

Veturi, Yogasudha, de los Campos, Gustavo, Yi, Nengjun, Huang, Wen, Vazquez, Ana I., Kühnel, Brigitte

Journal:

Year:

2019

Language:

english

File:

PDF, 2.02 MB

english, 2019

23

Multiple Metabolic Genetic Risk Scores and Type 2 Diabetes Risk in Three Racial/Ethnic Groups

Klimentidis, Yann C., Wineinger, Nathan E., Vazquez, Ana I., de los Campos, Gustavo

Journal:

Journal of Clinical Endocrinology & Metabolism

Year:

2014

Language:

english

File:

PDF, 413 KB

english, 2014

24

Microarray Gene Expression Dataset Re-analysis Reveals Variability in Influenza Infection and Vaccination

Rogers, Lavida R. K., de los Campos, Gustavo, Mias, George I.

Journal:

Frontiers in Immunology

Year:

2019

File:

PDF, 3.69 MB

2019

25

Benchmarking Parametric and Machine Learning Models for Genomic Prediction of Complex Traits

Azodi, Christina B., Bolger, Emily, McCarren, Andrew, Roantree, Mark, de los Campos, Gustavo, Shiu, Shin-Han

Journal:

G3 Genes|Genome|Genetics

Year:

2019

File:

PDF, 2.13 MB

2019

26

A commentary on Pitfalls of predicting complex traits from SNPs

de los Campos, Gustavo, Sorensen, Daniel A.

Journal:

Nature Reviews Genetics

Year:

2013

Language:

english

File:

PDF, 84 KB

english, 2013

27

Evaluating Sequence-Based Genomic Prediction with an Efficient New Simulator

Pérez-Enciso, Miguel, Forneris, Natalia, de los Campos, Gustavo, Legarra, Andrés

Journal:

Year:

2017

Language:

english

File:

PDF, 1.01 MB

english, 2017

28

Modelling heterogeneity among fitness functions using random regression

Reynolds, Richard J., de los Campos, Gustavo, Egan, Scott P., Ott, James R., Hadfield, Jarrod

Journal:

Methods in Ecology and Evolution

Year:

2016

Language:

english

File:

PDF, 978 KB

english, 2016

29

Genomic models with genotype × environment interaction for predicting hybrid performance: an application in maize hybrids

Acosta-Pech, Rocío, Crossa, José, de los Campos, Gustavo, Teyssèdre, Simon, Claustres, Bruno, Pérez-Elizalde, Sergio, Pérez-Rodríguez, Paulino

Journal:

Theoretical and Applied Genetics

Year:

2017

Language:

english

File:

PDF, 1.30 MB

english, 2017

30

The Genetic Regulation of Alternative Splicing in Populus deltoides

Noble, Jerald D., Balmant, Kelly M., Dervinis, Christopher, de los Campos, Gustavo, Resende, MÃ¡rcio F. R., Kirst, Matias, Barbazuk, William Brad

Journal:

Frontiers in Plant Science

Year:

2020

File:

PDF, 1.36 MB

2020

31

Genome-wide association study reveals putative regulators of bioenergy traits in Populus deltoides

Fahrenkrog, Annette M., Neves, Leandro G., Resende, Márcio F. R., Vazquez, Ana I., de los Campos, Gustavo, Dervinis, Christopher, Sykes, Robert, Davis, Mark, Davenport, Ruth, Barbazuk, William B., Kir

Journal:

New Phytologist

Year:

2016

Language:

english

File:

PDF, 1.34 MB

english, 2016

32

Untangling the complex relationships between incident gout risk, serum urate, and its comorbidities

Sun, Mengying, Vazquez, Ana I., Reynolds, Richard J., Singh, Jasvinder A., Reeves, Mathew, Merriman, Tony R., Gaffo, Angelo L., los Campos, Gustavo de

Journal:

Arthritis Research & Therapy

Year:

2018

Language:

english

File:

PDF, 822 KB

english, 2018

33

Microarray Gene Expression Dataset Re-analysis Reveals Variability in Influenza Infection and Vaccination

Rogers, Lavida R. K., de los Campos, Gustavo, Mias, George I.

Journal:

Frontiers in Immunology

Year:

2019

Language:

english

File:

PDF, 3.69 MB

english, 2019

34

Heritability of pulmonary function estimated from pedigree and whole-genome markers

Klimentidis, Yann C., Vazquez, Ana I., de los Campos, Gustavo, Allison, David B., Dransfield, Mark T., Thannickal, Victor J.

Journal:

Frontiers in Genetics

Year:

2013

Language:

english

File:

PDF, 937 KB

english, 2013

35

Genomic Heritability: What Is It?

de los Campos, Gustavo, Sorensen, Daniel, Gianola, Daniel, Barsh, Gregory S.

Journal:

Year:

2015

Language:

english

File:

PDF, 812 KB

english, 2015

36

Diagnosing pregnancy status using infrared spectra and milk composition in dairy cows

Toledo-Alvarado, Hugo, Vazquez, Ana I., de los Campos, Gustavo, Tempelman, Robert J., Bittante, Giovanni, Cecchinato, Alessio

Journal:

Journal of Dairy Science

Year:

2017

Language:

english

File:

PDF, 631 KB

english, 2017

37

Imperfect Linkage Disequilibrium Generates Phantom Epistasis (& Perils of Big Data)

de los Campos, Gustavo, Sorensen, Daniel Alberto, Toro, Miguel Angel

Journal:

G3 Genes|Genome|Genetics

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

38

Factor analysis models for structuring covariance matrices of additive genetic effects: a Bayesian implementation

Gustavo de los Campos, Daniel Gianola

Journal:

Genetics Selection Evolution

Year:

2007

Language:

english

File:

PDF, 136 KB

english, 2007

39

Breast cancer survival and the expression of genes related to alcohol drinking

Cheng, Hui G., Gonzalez-Reymundez, Agustin, Li, Irene, Pathak, Ania, Pathak, Dorothy R., de los Campos, Gustavo, Vazquez, Ana Ines, Sang, Qing-Xiang Amy

Journal:

Year:

2020

Language:

english

File:

PDF, 858 KB

english, 2020

40

Phantom Epistasis in Genomic Selection: On the Predictive Ability of Epistatic Models

Schrauf, MatÃas F., Martini, Johannes W. R., Simianer, Henner, de los Campos, Gustavo, Cantet, Rodolfo, Freudenthal, Jan, Korte, Arthur, Munilla, SebastiÃ¡n

Journal:

G3 Genes|Genome|Genetics

Year:

2020

File:

PDF, 494 KB

2020

41

Heat Maps of Hypertension, Diabetes Mellitus, and Smoking in the Continental United States

Loop, Matthew Shane, Howard, George, de los Campos, Gustavo, Al-Hamdan, Mohammad Z., Safford, Monika M., Levitan, Emily B., McClure, Leslie A.

Journal:

Circulation Cardiovascular Quality and Outcomes

Year:

2017

Language:

english

File:

PDF, 4.10 MB

english, 2017

42

Changes in milk characteristics and fatty acid profile during the estrous cycle in dairy cows

Toledo-Alvarado, Hugo, Vazquez, Ana I., de los Campos, Gustavo, Tempelman, Robert J., Gabai, Gianfranco, Cecchinato, Alessio, Bittante, Giovanni

Journal:

Journal of Dairy Science

Year:

2018

Language:

english

File:

PDF, 1.88 MB

english, 2018

43

Semi-parametric genomic-enabled prediction of genetic values using reproducing kernel Hilbert spaces methods

DE LOS CAMPOS, GUSTAVO, GIANOLA, DANIEL, ROSA, GUILHERME J. M., WEIGEL, KENT A., CROSSA, JOSÉ

Journal:

Genetics Research

Year:

2010

Language:

english

File:

PDF, 747 KB

english, 2010

44

Incorporating Genetic Heterogeneity in Whole-Genome Regressions Using Interactions

de los Campos, Gustavo, Veturi, Yogasudha, Vazquez, Ana I., Lehermeier, Christina, Pérez-Rodríguez, Paulino

Journal:

Journal of Agricultural, Biological, and Environmental Statistics

Year:

2015

Language:

english

File:

PDF, 4.61 MB

english, 2015

45

Prediction of Expected Years of Life Using Whole-Genome Markers

de los Campos, Gustavo, Klimentidis, Yann C., Vazquez, Ana I., Allison, David B., Timpson, Nicholas John

Journal:

Year:

2012

Language:

english

File:

PDF, 321 KB

english, 2012

46

Prediction of years of life after diagnosis of breast cancer using omics and omic-by-treatment interactions

González-Reymúndez, Agustín, de los Campos, Gustavo, Gutiérrez, Lucía, Lunt, Sophia Y, Vazquez, Ana I

Journal:

European Journal of Human Genetics

Year:

2017

Language:

english

File:

PDF, 683 KB

english, 2017

47

Complex-Trait Prediction in the Era of Big Data

de los Campos, Gustavo, Vazquez, Ana Ines, Hsu, Stephen, Lello, Louis

Journal:

Trends in Genetics

Year:

2018

Language:

english

File:

PDF, 1.24 MB

english, 2018

48

Deciphering Sex-Specific Genetic Architectures Using Local Bayesian Regressions

Funkhouser, Scott A., Vazquez, Ana I., Steibel, Juan P., Ernst, Catherine W., los Campos, Gustavo de

Journal:

Year:

2020

File:

PDF, 1.63 MB

2020

49

A Scale-Corrected Comparison of Linkage Disequilibrium Levels between Genic and Non-Genic Regions

Berger, Swetlana, Schlather, Martin, de los Campos, Gustavo, Weigend, Steffen, Preisinger, Rudolf, Erbe, Malena, Simianer, Henner, Yin, Tongming

Journal:

Year:

2015

Language:

english

File:

PDF, 1.35 MB

english, 2015

50

Genomic Prediction of Breeding Values when Modeling Genotype × Environment Interaction using Pedigree and Dense Molecular Markers

Burgueño, Juan, de los Campos, Gustavo, Weigel, Kent, Crossa, José

Journal:

Year:

2012

Language:

english

File:

PDF, 9.42 MB

english, 2012

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